Program

Program

Conference presentations

———————Thursday 5th October, 2017
1:00 - 1:10 pmWelcome presentationMartin Hirsch, AP-HP Chief Executive Officer
1:10 - 1:15General InformationChristel Daniel
-1:15 - 3:15Topic 1: Massive data and user experienceChair : Nicolas Paris
1:15 - 1:45Keynote Presentation 1
Integrating Genomic, Imaging, and Clinical Data for Precision Medicine
Shawn Murphy
Chief Research Information Officer - Professor of Neurology at Harvard Business School
1:45 - 2:00Migration of intensive care unit (ICU) data into a medical research data martDr Ulrich Sax, University Medical Center Goettingen
2:00 - 2:15i2b2 Integration and Use of Molecular Diagnostic Genomic Assay Results for Clinical ResearchJack London, Sidney Kimmel Cancer Center Thomas Jefferson University
2:15 - 2:30i2b2, Cafe Variome and tranSMART: The Forefront of Health Data Management and Discovery in LeicesterTim Beck, Adam Webb, University of Leicester
2:30 - 2:45An i2b2-based framework for dose regimen modeling in the context of cancer chemotherapyAnne-Sophie Jannot, Eric Zapletal, Angelika Geroldinger, Sandrine Boulet, Sarah Zohar, Anita Burgun.
AP-HP, INSERM UMR_S 1138 ,Paris Descartes University
2:45 - 3:00Extending data warehousing with image extraction capabilities for radiomics studiesKarine Seymour (MASc, eMBA), President of Medexprim, Toulouse, France
3:00 - 3:15The Georges Pompidou University Hospital i2b2 Warehouse: learning and feedback from 8-years’ experienceAnne-Sophie Jannot, Eric Zapletal, Paul Avillach, Marie-France Mamzer, Anita Burgun, Patrice Degoulet.
AP-HP, INSERM UMR_S 1138 ,Paris Descartes University
3:15 - 3:45Coffee Break
3:45 - 4:15InSiteBrecht Claerhout
4:15 - 6:00Topic 2: Networking data for better careChair : Christel Daniel
4:15 - 4:45Keynote Presentation 2
i~HD and i2b2
Dipak Kalra
President of the European Institute for Health Records
President of the European Institute for Innovation through Health Data
4:45 - 5:00MIRACUM: Sharing Data for a Learning Health SystemThomas Ganslandt, Medical Informatics, Friedrich-Alexander-University Erlangen-Nürnberg
5:00 - 5:15Ontology-Based Data InterchangeJeffrey Klann, Harvard University School of Medicine
5:15 - 5:30MedCo: Enabling Privacy-Conscious Exploration of Distributed Clinical and Genomic DataJean Raisaro, École Polytechnique Fédérale de Lausanne (EPFL)
5:30 - 5:45I2b2 implementation over Smart on FHIRNicolas Paris, APHP/CNRS Michael Mendis, Partners Christel Daniel, APHP/INSERM Shawn Murphy, Partners
5:45 - 6:00Convergence of the care system and the personalized health research framework: The example of SwitzerlandChristian Lovis, HUG Geneve
6:00 - 7:00i2b2/tranSMART Foundation special programme
6:00 - 7:00i2b2 Foundation and tranSMART Foundation merger: Open source software supporting Clinical and Translational ResearchDiane Keogh, Peter Rice, Shawn Murphy, MD, PhD., Paul Avillach, MD, PhD
8:30 pmConference dinner at restaurant "L’Escarmouche" 38 et 40 rue de la Montagne Sainte Geneviève, 75005 – PARISAdditionnal registration required !
Friday 6th October, 2017
7:30 - 8:30 ami2b2/tranSMART Foundation special programme
7:30 - 8:30Technical overview and demo of the tranSMART platformPeter Rice, i2b2 tranSMART Foundation
8:30 - 9:30Topic 3: Extending data warehousing beyond clinical dataChair : Anne-Sophie Jannot
8:30 - 9:00Keynote Presentation 3
i2b2/tranSMART: integration and access of multiple layers of clinical and omics data
Paul Avillach
Harvard Medical School
9:00 - 9:15i2b2 and tranSMART 2017: first experiences of interoperabilityMauro Bucalo, Ward Weistra, Jan Kanis, Matteo Gabetta, Biomeris
9:15 - 9:30How pathology registries can be integrated with the i2b2 framework in the light of a Learning Healthcare System CycleValentina Tibollo, Instituti Clinici Scientifici Maugeri Pavia
9:30 - 10:30i2b2/tranSMART Foundation special programme
9:30 - 9:50A modern open source interface for tranSMART, inspired by i2b2: The latest in Glowing BearWard Weistra, The Hyve
9:50 - 10:10Daedalus: an ESCCA project to elevate the impact of cytomics on translational researchIannis Drakos and Nicolas Derian - Informatics.bio, ESCCA
10:10 10:30A next generation visual analytics platformSascha Herzinger, Université du Luxembourg. Centre For Systems Biomedicine (LCSB)
10:30 - 11:00Coffee Break
11:00 - 11:55Topic 4: Data governance and ethical aspects of data warehousingChair : Marie-Christine Jaulent
11:00 - 11:20Keynote Presentation 4
Reusing health data for research – the patient perspective
Katie Gallagher, Policy Adviser at European Patients’​ Forum (EPF)
11:20 - 11:40Reusing health data for research – the patient perspective in FranceMarie-France Mamzer (AP-HP)
11:40 - 11:55Patients concerns about the AP-HP Clinical Data RepositoryStéphane Bréant, Claire Hassen Khodja, Armande François, Marie-France Mamzer, Christel Daniel
11:55 - 12:30Round tableChair : Marie-Christine JAULENT
12:30 - 1:00Closing presentationChristel Daniel

Featured Posters

Topic 1
→Bioxplor- big data and machine learning platform for life science discoveryMark Rogers, Bioxplor
Improving execution speed of i2b2 queries by using a Solr index based query engineLeon Liman, University of Wuerzburg
Topic 2
→Using i2b2 for chronic patients control and follow-up through a mobile app communication framework.Jesus Moreno Conde, Virgen del Rocío University Hospital (Seville, Spain)
→MedCo: Enabling Privacy-Conscious Exploration of Distributed Clinical and Genomic DataJean Raisaro, École Polytechnique Fédérale de Lausanne (EPFL)
Topic 3
→Secondary use of administrative claims data from the Austrian health insurance system with i2b2Florian Endel, Wien University
→Biomedical Informatics Research
Data Management Pipeline with i2b2/tranSMARTChristian Bauer, University Medical Center Goettingen
→How pathology registries can be integrated with the i2b2 framework in the light of a Learning Healthcare System CycleValentina Tibollo, Instituti Clinici Scientifici Maugeri Pavia
Healthcare trajectory reconstruction with i2b2 data : pitfalls and how to avoid them​Christina Khnaisser, Luc Lavoie, Anita Burgun and Jean-François Ethier Département d’informatique, Université de Sherbrooke, Sherbrooke, Canada INSERM UMR 1138 team 22 Centre de Recherche des Cordeliers, Université Paris Descartes
→Storing biological data in i2b2: Extending the representation of laboratory exams beyond the sheer resultVincent Looten (1,2,3), Anita Burgun (1,2,3), Bastien Rance (1,2,3) (1) Centre de Recherche des Cordeliers, Université Paris Descartes (2) UMRS1138, INSERM UMRS 1138 team 22, Paris, France (3) Georges Pompidou university hospital, AP-HP, Paris, France
A Fast Healthcare Interoperability Resources (FHIR) layer implemented over i2b2 (↑paper)Abdelali Boussadi, PhD(1, 2), Eric Zapletal, PhD(2) (1) INSERM UMR 1138, Equipe 22, Centre de Recherche des Cordeliers, Universités Paris 5 et 6, Paris, France (2) Département de Santé Publique et Informatique Médicale, Hôpital Européen Georges Pompidou, Assistance Publique – Hôpitaux de Paris, Paris, France
i2b2/tranSMART Foundation special program
→Developing interactive plug-ins for tranSMART using the SmartR framework: The case of survival analysisC. Knell (a), M. Sedlmayr (a), J. Christoph (a)
(a) Chair of Medical Informatics, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Germany
Fractalis: A scalable open-source framework for platform independent interactive visual analyticsSascha Herzinger, Valentin Groues, Peter Banda, Wei Gu, Venkata Satagopam, Reinhard Schneider
Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch/Belval, Luxembourg
The Arborist and tmtk: A researcher friendly data loading toolkit for tranSMARTJochem Bijlard [1], Ward Weistra [1], Stefan Payralbe [1], Natalia Boukharov [2], Mariska Bierkens [3], Annemieke Hiemstra [3], Remond Fijneman [3], Jan-Willem Boiten [4], Gerrit Meijer [3]
[1] The Hyve, Utrecht, The Netherlands, [2] The Hyve, Cambridge, USA, [3] Netherlands Cancer Institute, Amsterdam, The Netherlands, [4] Lygature, Utrecht, The Netherlands